nedjelja, 25. srpnja 2010.

PROTEOME-2 (Part 5)




Molecular biocoding of Prot P62258 14-3-3 protein epsilon, Homo sapiens

Fragment „M“

Amino acids

M

M

M

M

M

M

M

M

M

M

Number of atoms

20

20

20

20

20

20

20

20

20

20

Rank

1

23

27

33

81

88

124

160

221

235

APa

20

446

518

628

1553

1710

2401

3053

4195

4473

I

I

I

I

I

I

I

I

I

I

APb

4828

4402

4330

4220

3295

3138

2447

1795

653

375

I

I

I

I

I

I

I

I

I

I

Sum

4848

4848

4848

4848

4848

4848

4848

4848

4848

4848

Fragment „Q“

Amino acids

Q

Q

Q

Q

Q

Q

Q

Q

Q

Number of atoms

20

20

20

20

20

20

20

20

20

Rank

10

16

68

87

222

236

242

248

255

APa

198

309

1305

1690

4215

4493

4587

4702

4828

I

I

I

I

I

I

I

I

I

APb

4650

4539

3543

3158

633

355

261

146

20

I

I

I

I

I

I

I

I

I

Sum

4848

4848

4848

4848

4848

4848

4848

4848

4848

Fragment „G“

Amino acids

G

G

G

G

G

G

G

G

G

G

Number of atoms

10

10

10

10

10

10

10

10

10

10

Rank

32

54

74

75

115

126

138

172

237

239

APa

608

1027

1418

1428

2210

2435

2662

3279

4503

4529

I

I

I

I

I

I

I

I

I

I

APb

4230

3811

3420

3410

2628

2403

2176

1559

335

309

I

I

I

I

I

I

I

I

I

I

Sum

4838

4838

4838

4838

4838

4838

4838

4838

4838

4838

Fragment „F“

Amino acids

F

F

F

F

F

Number of atoms

23

23

23

23

23

Rank

120

135

177

180

199

APa

2309

2622

3376

3432

3794

I

I

I

I

I

APb

2542

2229

1475

1419

1057

I

I

I

I

I

Sum

4851

4851

4851

4851

4851

etc.

Figure 4. Schematic representation of the bio fragments Apa and APb..

Notes: Each peptide chain can have as many atoms as necessary to meet the mathematical balance of the biochemical phenomenon at certain mathematical level. By using the system and information procedures and methods in studying biochemistry, we can analyze the effects of the classical and information parameters in the protein evolution process.

We would particularly like to stress here that the genetic, as well as biochemical information in a broader sense of the word, is determined and characterized by very complex cybernetic and information principles. The constantans in those principles are: the number of atoms and molecules, atomic numbers, atomic weight, physical and chemical parameters, even and odd values, codes and analogue codes, standard deviations, frequencies, primary and secondary values, and many other things.







Objavio/la u Nema komentara:

PROTEOME-2 (Part 4)




PROTEOME-2 (Part 4)

Molecular biocoding of Prot P62258 14-3-3 protein epsilon, Homo sapiens

Table 1. Bio intervals Apa and APb

M

Q

Y

Y

.

.

A

E

20

20

24

24

.

.

13

19

1

16

20

49

.

.

112

116

I

I

I

I

.

.

I

I

APa

20

309

391

935

.

.

2166

2229

I

I

I

I

.

.

I

I

4788

4210

4046

2958

.

.

496

370

I

I

I

I

.

.

I

I

APb

4808

4519

4437

3893

.

.

2662

2599

I

I

I

I

.

.

I

I

D

A

D

K

.

.

N

S

16

13

16

24

.

.

17

14

2

17

21

50

.

.

113

117

Y

H

24

20

121

129

I

I

2333

2495

I

I

162

162

I

I

2495

2333

I

I

Y

R

24

26

122

130

E

G

E

D

Y

.

.

S

D

19

10

19

16

24

.

.

14

16

134

138

146

157

182

.

.

233

238

I

I

I

I

I

.

I

I

I

2599

2662

2809

2998

3480

.

.

4437

4519

I

I

I

I

I

.

I

I

I

370

496

790

1168

2132

.

.

4046

4210

I

I

I

I

I

.

I

I

I

2229

2166

2019

1830

1348

.

.

391

309

I

I

I

I

I

.

I

I

I

F

N

N

I

E

.

.

D

G

23

17

17

22

19

.

.

16

10

135

139

147

158

183

.

.

234

239

Table 1. Schematic representation of the bio intervals Apa and APb

Notes: The molecule of protein we can understand as words built from letters, i.e. aminoacids. The meaning of words is determined by positioning of letters. Each of these words has its biochemical base. If this base is expressed by corresponding discrete numbers, we find out that the base has its own program, cybernetic and information characteristics. In fact, we will find out that the sequencing of the molecule is conditioned and determined not only by biochemical, but also by cybernetic and information principles.

The corresponding amino acids

Each bar in the protein chain attracts only the corresponding aminoacid, and only the relevant aminoacid can be positioned at certain place in the chain. Each peptide chain can have the exact number of aminoacids necessary to meet the strictly determined mathematical conditioning. It can have as many atoms as necessary to meet the mathematical balance of the biochemical phenomenon at certain mathematical level, etc. The digital language of biochemistry has a countless number of codes and analogue codes, as well as other information content. These pictures enable us to realize the very essence of functioning of biochemical processes.

Fragment Y,H,Y,R

Y

H

I

I

Sum

2333

2495

>

4828

I

I

162

162

I

I

2495

2333

>

4828

Sum

4828

4828

I

I

Y

R

(2495-2333) = 162; (2333+2495) = 4828;

Fragment E,E,S,F

E

E

I

I

Sum

2229

2599

>

4828

I

I

370

370

I

I

2599

2229

>

4828

Sum

4828

4828

I

I

S

F

Fragment A,G,N,N

A

G

I

I

Sum

2166

2662

>

4828

I

I

496

496

I

I

2662

2166

>

4828

Sum

4828

4828

I

I

N

N

Fragment L,E,D,N

L

E

I

I

Sum

2019

2809

>

4828

I

I

790

790

I

I

2809

2019

>

4828

Sum

4828

4828

I

I

D

N








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